Bioinformatics Problems

DNA Analysis arrow_drop_up

• 1. Counting DNA Nucleotides Easy
• 2. Transcribing DNA into RNA Medium
• 3. Computing GC Content Easy
• 4. Reverse Complement of a DNA String Easy
• 5. Finding the Motif in DNA Hard
• 6. Finding the Longest ORF Medium
• 7. Hamming Distance Easy
• 8. Locating Restriction Sites Hard
• 9. Inferring mRNA from Protein Medium
• 10. Finding Repeats in DNA Medium

Protein Synthesis arrow_drop_up

• 11. Translating RNA into Protein Hard
• 12. Protein Weight Calculation Medium
• 13. Identifying Active Sites Medium
• 14. Protein Motif Search Medium
• 15. Inferring Protein from DNA Easy
• 16. Peptide Encoding Problem Hard
• 17. Protein Structure Prediction Hard
• 18. Protein Folding Simulation Hard
• 19. Predicting Protein-Protein Interactions Hard
• 20. Protein Sequence Alignment Medium

RNA Analysis arrow_drop_up

• 21. Secondary Structure Prediction Hard
• 22. Predicting RNA Folding Medium
• 23. Finding RNA Motifs Medium
• 24. RNA Splicing Medium
• 25. Predicting mRNA Half-Life Hard
• 26. RNA-Protein Interaction Prediction Hard
• 27. Predicting miRNA Targets Medium
• 28. RNA-Seq Data Analysis Hard
• 29. Inferring RNA from DNA Medium
• 30. RNA Secondary Structure Prediction Hard

Genomics arrow_drop_up

• 31. Genome Assembly Hard
• 32. Identifying SNPs Medium
• 33. Phylogenetic Tree Construction Hard
• 34. Mapping Short Reads Hard
• 35. Inferring Ancestry from Genomic Data Medium
• 36. Genome-Wide Association Study (GWAS) Hard
• 37. Identifying Copy Number Variations Hard
• 38. Comparative Genomics Hard
• 39. Metagenomic Analysis Hard
• 40. Structural Variation Detection Medium

Evolutionary Biology arrow_drop_up

• 41. Molecular Clock Estimation Hard
• 42. Inferring Phylogenies Medium
• 43. Population Genetics Simulation Hard
• 44. Predicting Evolutionary Relationships Hard
• 45. Comparing Protein Evolution Rates Medium
• 46. Gene Duplication Analysis Medium
• 47. Estimating Genetic Drift Medium
• 48. Modeling Natural Selection Hard
• 49. Evolutionary Game Theory Simulations Hard
• 50. Inferring Selection Pressures Hard

Structural Biology arrow_drop_up

• 51. 3D Structure Prediction Hard
• 52. Molecular Docking Simulation Hard
• 53. Protein-Ligand Interaction Prediction Hard
• 54. Predicting Protein Domains Medium
• 55. Inferring Protein Function from Structure Hard
• 56. Molecular Dynamics Simulation Hard
• 57. Modeling Protein-Protein Interactions Hard
• 58. Predicting Binding Sites Medium
• 59. Predicting Secondary Structure Medium
• 60. Analyzing Structural Variants Hard